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UNU OpenCourseWare
The United Nations University formally joined the OpenCourseWare (OCW) Consortium on 24 May 2006 and became a member of the Japan OCW Consortium on 26 March 2008.
The UN University is committed to the development of this OCW website that showcases the training and educational programmes implemented by the University in a wide range of areas relevant to the work of the United Nations. › Continue reading
UCI OpenCourseWare
Founded in 1965, The University of California, Irvine combines the strengths of a major research university with the bounty of an incomparable Southern California location. Over four remarkable decades, UCI has become internationally recognized for efforts that are improving lives through research and discovery, fostering excellence in scholarship and teaching, and engaging and enriching the community.
UCI is among the fastest-growing campuses in the UC system. Increasingly a first-choice campus for students, UCI attracts record numbers of undergraduate applications each year and admits freshmen with highly competitive academic profiles. UCI is a center for quality education and is consistently ranked among the nation’s best universities. Achievements in the sciences, arts, humanities, medicine, and management have garnered top 50 national rankings for more than 40 academic programs. Three UCI researchers have won Nobel Prizes—two in chemistry and one in physics. › Continue reading
Biomedical Information Technology
Level:
Instructors:
Prof. Sourav Saha Bhowmick
Prof. C. Forbes Dewey, Jr.
Prof. Hanry Yu
Techniques to model and analyze biological pathways are among the topics covered in this class. For instance, this map excerpt shows some protein interaction pathways in yeast S. cerevisiae that are also found in the fruit fly D. melanogaster: see assigned readings for the class. (Protein map excerpt courtesy of Tomer Shlomi et al. Source: Shlomi, T., et al. “QPath: A Method for Querying Pathways in a Protein-protein Interaction Network.” BMC Bioinformatics 7 (2006): 199. Yeast and fly images courtesy of NASA.)
Course Description
This course teaches the design of contemporary information systems for biological and medical data. Examples are chosen from biology and medicine to illustrate complete life cycle information systems, beginning with data acquisition, following to data storage and finally to retrieval and analysis. Design of appropriate databases, client-server strategies, data interchange protocols, and computational modeling architectures. Students are expected to have some familiarity with scientific application software and a basic understanding of at least one contemporary programming language (e.g. C, C++, Java, Lisp, Perl, Python). A major term project is required of all students. This subject is open to motivated seniors having a strong interest in biomedical engineering and information system design with the ability to carry out a significant independent project.
This course was offered as part of the Singapore-MIT Alliance (SMA) program as course number SMA 5304.
Technical Requirements
Special software is required to use some of the files in this course: .xls.
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